The GenerateOntologyIndividuals class within the net.sourceforge.symba.mapping.hibernatejaxb2 package allows the user to generate quickly a FuGE-ML OntologyCollection file that can then be loaded into the database as part of a FuGE-ML file.
The input file is of the type:
accession1::name1 accession2::name2 [...] accessionN::nameN
And you'll get out some FuGE-ML to load into your database. The ontologySource URI and the URN namespace are hard-coded right now, so you will need to modify that to suit your needs.
