compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

Dependency Tree

• net.sourceforge.fuge:fuge-hibernate-mapping:jar
  • net.sourceforge.fuge:fuge-hibernate-core:jar
    • net.sourceforge.fuge:fuge-hibernate-common:jar
    • org.andromda.translationlibraries:andromda-ocl-validation-library:jar
      • org.andromda.metafacades:andromda-metafacades-uml:jar
        • org.andromda:andromda-utils:jar
        • org.andromda:andromda-core:jar
        • org.andromda.translationlibraries:andromda-ocl-translation-core:jar

    • org.springframework:spring:jar
    • aopalliance:aopalliance:jar
    • org.hibernate:hibernate:jar
      • net.sf.ehcache:ehcache:jar
      • asm:asm-attrs:jar
      • dom4j:dom4j:jar
      • antlr:antlr:jar
      • cglib:cglib:jar
      • asm:asm:jar

    • commons-collections:commons-collections:jar
    • commons-beanutils:commons-beanutils:jar
    • commons-logging:commons-logging:jar
      • log4j:log4j:jar
      • logkit:logkit:jar
      • avalon-framework:avalon-framework:jar
      • javax.servlet:servlet-api:jar

    • commons-lang:commons-lang:jar
    • jboss:jboss-j2ee:jar
    • org.andromda:andromda-script-wrappers:jar
      • org.beanshell:bsh:jar
      • groovy:groovy-all-1.0-jsr:jar

  • net.sourceforge.fuge:fuge-jaxb2:jar
    • com.sun.xml.bind:jaxb-impl:jar
      • javax.xml.bind:jaxb-api:jar
        • javax.xml.stream:stax-api:jar
        • javax.activation:activation:jar

  • jdom:jdom:jar
  • postgresql:postgresql:jar
  • org.testng:testng:jar:jdk15
    • junit:junit:jar

Dependency Listings

FuGE Hibernate STK Code: Mapping Between Hibernate and JAXB2

The FuGE Hibernate STK ProjectThe Functional Genomics Experiment data model (FuGE) has been developed to facilitate convergence of data standards for high-throughput, comprehensive analyses in biology. FuGE models the components of an experimental activity that are common across different technologies, including protocols, samples and data. FuGE provides a foundation for describing entire laboratory workflows and for the development of new data formats. The Microarray Gene Expression Data society and the Proteomics Standards Initiative have committed to using FuGE as the basis for defining their respective standards, and other standards groups, including the Metabolomics Standards Initiative, are evaluating FuGE in their development efforts. Adoption of FuGE by multiple standards bodies will enable uniform reporting of common parts of functional genomics workflows, simplify data-integration efforts and ease the burden on researchers seeking to fulfill multiple minimum reporting requirements. Such advances are important for transparent data management and mining in functional genomics and systems biology. See doi:10.1038/nbt1347

http://fuge.sourceforge.net/stks/hibernate-stk/fuge-hibernate-mapping

FuGE Hibernate STK Core Business Tier

The FuGE Hibernate STK ProjectThe Functional Genomics Experiment data model (FuGE) has been developed to facilitate convergence of data standards for high-throughput, comprehensive analyses in biology. FuGE models the components of an experimental activity that are common across different technologies, including protocols, samples and data. FuGE provides a foundation for describing entire laboratory workflows and for the development of new data formats. The Microarray Gene Expression Data society and the Proteomics Standards Initiative have committed to using FuGE as the basis for defining their respective standards, and other standards groups, including the Metabolomics Standards Initiative, are evaluating FuGE in their development efforts. Adoption of FuGE by multiple standards bodies will enable uniform reporting of common parts of functional genomics workflows, simplify data-integration efforts and ease the burden on researchers seeking to fulfill multiple minimum reporting requirements. Such advances are important for transparent data management and mining in functional genomics and systems biology. See doi:10.1038/nbt1347

http://fuge.sourceforge.net/stks/hibernate-stk/fuge-hibernate-core

FuGE Hibernate STK Common

The FuGE Hibernate STK ProjectThe Functional Genomics Experiment data model (FuGE) has been developed to facilitate convergence of data standards for high-throughput, comprehensive analyses in biology. FuGE models the components of an experimental activity that are common across different technologies, including protocols, samples and data. FuGE provides a foundation for describing entire laboratory workflows and for the development of new data formats. The Microarray Gene Expression Data society and the Proteomics Standards Initiative have committed to using FuGE as the basis for defining their respective standards, and other standards groups, including the Metabolomics Standards Initiative, are evaluating FuGE in their development efforts. Adoption of FuGE by multiple standards bodies will enable uniform reporting of common parts of functional genomics workflows, simplify data-integration efforts and ease the burden on researchers seeking to fulfill multiple minimum reporting requirements. Such advances are important for transparent data management and mining in functional genomics and systems biology. See doi:10.1038/nbt1347

http://fuge.sourceforge.net/stks/hibernate-stk/fuge-hibernate-common

AndroMDA OCL Validation Translation-Library

Translates OCL into validation code for any platform.

http://www.andromda.org/andromda-translation-libraries/andromda-ocl-translation-libraries/andromda-ocl-validation-library

AndroMDA UML Common Metafacades

The common UML metafacades. This is the set of core UML metafacades used to provide access UML meta models.

http://www.andromda.org/andromda-metafacades/andromda-uml-metafacades/andromda-metafacades-uml

AndroMDA Utils

AndroMDA (pronounced: andromeda) is an open source code generation framework that follows the Model Driven Architecture (MDA) paradigm. It takes model(s) from CASE-tool(s) and generates fully deployable applications and other components.

http://www.andromda.org/andromda-utils

AndroMDA Core

The Core refers to the "engine" of the framework. The core takes care of making all the components of AndroMDA work together. This includes plugin discovery (i.e. cartridges, translation-libraries), manufacturing of metafacades, etc.

http://www.andromda.org/andromda-core

AndroMDA OCL Translation Core

The AndroMDA OCL translation engine, providing the OCL translation support.

http://www.andromda.org/andromda-translation-libraries/andromda-ocl-translation-libraries/andromda-ocl-translation-core

Spring Framework

Spring Framework

http://www.springframework.org

AOP alliance

AOP Alliance

http://aopalliance.sourceforge.net

Hibernate

Relational Persistence for Java

http://www.hibernate.org

ehcache

ehcache is a pure Java, in-process cache with the following features: 1. Fast. 2. Simple. 3. Multiple eviction policies: LRU, LFU and FIFO. 4. Caches can be in memory or on disk. 5. Disk Stores can be persistent between VM restarts. 6. Distributed caching using multicast and RMI, with a pluggable API. 7. Cache and CacheManager listeners 8. Supports multiple Caches per CacheManager, and multiple CacheManagers per application. 9. Acts as a pluggable cache for Hibernate 3.1, 3 and 2.1. 10. Small foot print. Both in terms of size and memory requirements. 11. Minimal dependencies apart from J2SE. 12. Fully documented. See the online Documentation and the online JavaDoc. 13. Comprehensive Test Coverage. See the clover test report. 14. Available under the Apache 1.1 license. EHCache's copyright and licensing has been reviewed and approved by the Apache Software Foundation, making EHCache suitable for use in Apache projects. 15. Production tested. EHCache is used on a large and very busy eCommerce site. 16. Web caching, pull-through caches and other common caching implementations are provided in the ehcache-constructs module.

http://ehcache.sf.net

asm-attrs

http://asm.objectweb.org/

dom4j

dom4j: the flexible XML framework for Java

http://dom4j.org

AntLR

http://www.antlr.org/

cglib

http://cglib.sourceforge.net/

asm

http://asm.objectweb.org/

Collections

Types that extend and augment the Java Collections Framework.

http://jakarta.apache.org/commons/collections/

Unnamed - commons-beanutils:commons-beanutils:jar:1.7.0

Logging

Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems.

http://jakarta.apache.org/commons/${pom.artifactId.substring(8)}/

Unnamed - log4j:log4j:jar:1.2.12

Unnamed - logkit:logkit:jar:1.0.1

Unnamed - avalon-framework:avalon-framework:jar:4.1.3

Unnamed - javax.servlet:servlet-api:jar:2.3

Lang

Commons.Lang, a package of Java utility classes for the classes that are in java.lang's hierarchy, or are considered to be so standard as to justify existence in java.lang.

http://jakarta.apache.org/commons/lang/

Unnamed - jboss:jboss-j2ee:jar:3.2.3

AndroMDA Script Wrappers

Provides implementations of "Script Wrapper" classes, these classes are injected into class files in order to provide the ability to write your business logic in an interpreted manner

http://www.andromda.org/andromda-script-wrappers

BeanShell

BeanShell

Unnamed - groovy:groovy-all-1.0-jsr:pom:06

FuGE JAXB2 Code

The FuGE XSD Project. The Functional Genomics Experiment data model (FuGE) has been developed to facilitate convergence of data standards for high-throughput, comprehensive analyses in biology. FuGE models the components of an experimental activity that are common across different technologies, including protocols, samples and data. FuGE provides a foundation for describing entire laboratory workflows and for the development of new data formats. The Microarray Gene Expression Data society and the Proteomics Standards Initiative have committed to using FuGE as the basis for defining their respective standards, and other standards groups, including the Metabolomics Standards Initiative, are evaluating FuGE in their development efforts. Adoption of FuGE by multiple standards bodies will enable uniform reporting of common parts of functional genomics workflows, simplify data-integration efforts and ease the burden on researchers seeking to fulfill multiple minimum reporting requirements. Such advances are important for transparent data management and mining in functional genomics and systems biology. See doi:10.1038/nbt1347

http://fuge.sourceforge.net/fuge-jaxb2

Unnamed - com.sun.xml.bind:jaxb-impl:jar:2.1

Unnamed - javax.xml.bind:jaxb-api:jar:2.1

Unnamed - javax.xml.stream:stax-api:jar:1.0-2

Unnamed - javax.activation:activation:jar:1.1

Unnamed - jdom:jdom:jar:1.0

PostgreSQL JDBC Driver

The PostgreSQL JDBC3 Driver for PostgreSQL 8.2 databases

http://jdbc.postgresql.org

TestNG

TestNG is a testing framework inspired from JUnit and NUnit but introducing some new functionalities that make it more powerful and easier to use.

http://testng.org

JUnit

JUnit is a regression testing framework written by Erich Gamma and Kent Beck. It is used by the developer who implements unit tests in Java.

http://junit.org